Publicaciones
Publicaciones

 

Publicaciones de los grupos de investigación del IIB-INTECH


Año 2018


1.
Alvarez, B., Barra, C., Nielsen, M. and Andreatta, M.
Computational Tools for the Identification and Interpretation of Sequence Motifs in Immunopeptidomes.
Proteomics : en prensa (2018)
Abstract - PDF - LINK - PubMed

2.
Andreatta, M. and Nielsen, M.
Bioinformatics Tools for the Prediction of T-Cell Epitopes.
Methods in Molecular Biology 1785: 269-281 (2018)
Abstract - PDF - LINK - PubMed

3.
Andreatta, M., Trolle, T., Yan, Z., Greenbaum, J. A., Peters, B. and Nielsen, M.
An automated benchmarking platform for MHC class II binding
Bioinformatics 34(9): 1522-1528 (2018)
Abstract - PDF - LINK - PubMed

4.
Arriola Benitez, P. C., Pesce Viglietti, A. I., Herrmann, C. K., Dennis, V. A., Comerci, D. J., Giambartolomei, G. H. and Delpino, M. V.
Brucella abortus Promotes a Fibrotic Phenotype in Hepatic Stellate Cells, with Concomitant Activation of the Autophagy Pathway.
Infection and Immunity 86(1): (2018)
Abstract - PDF - LINK - PubMed

5.
Bach, N.C., Marino, D.J.G., Natale, G.S. and Somoza, G.M.
Effects of Glyphosate and its commercial formulation, Roundup® Ultramax, on liver histology of tadpoles of the Neotropical frog, Leptodactylus latrans (Amphibia: Anura).
Chemosphere 202: 289-297 (2018)

6.
Beccaria, C. G., Amezcua Vesely, M. C., Fiocca Vernengo, F., Gehrau, R. C., Ramello, M. C., Tosello Boari, J., Gorosito Serran, M., Mucci, J., Piaggio, E., Campetella, O., Acosta Rodriguez, E. V., Montes, C. L. and Gruppi, A.
Galectin-3 deficiency drives lupus-like disease by promoting spontaneous germinal centers formation via IFN-gamma.
Nat Commun 9(1): 1628 (2018)
Abstract - PDF - LINK - PubMed

7.
Beccaria, C., Amezcua Vesely, M., Fiocca Vernengo, F., Gehrau, R., Ramello, M., Tosello Boari, M., Gorosito Serrán,M., Mucci, J., Piaggio, E., Campetella, O., Acosta Rodriguez, E., Montes, C. and Gruppi, A.
Galectin-3 deficiency drives lupus-like disease by promoting spontaneous germinal centers formation via IFN-γ
Nature Communications : en prensa (2018)
Abstract - PDF - LINK - PubMed

8.
Blanco, A. M., Sundarrajan, L., Bertucci, J. I. and Unniappan, S.
Why goldfish? Merits and challenges in employing goldfish as a model organism in comparative endocrinology research.
General and Comparative Endocrinology 257: 13-28 (2018)
Abstract - PDF - LINK - PubMed

9.
Bollini, M., Leal, E. S., Adler, N. S., Aucar, M. G., Fernandez, G. A., Pascual, M. J., Merwaiss, F., Alvarez, D. E. and Cavasotto, C. N.
Discovery of Novel Bovine Viral Diarrhea Inhibitors Using Structure-Based Virtual Screening on the Envelope Protein E2.
Front Chem 6: 79 (2018)
Abstract - PDF - LINK - PubMed

10.
Bouvier, L. A., Niemirowicz, G. T., Salas-Sarduy, E., Cazzulo, J. J. and Alvarez, V. E.
DNA-damage inducible protein 1 is a conserved metacaspase substrate that is cleaved and further destabilized in yeast under specific metabolic conditions.
FEBS Journal 285(6): 1097-1110 (2018)
Abstract - PDF - LINK - PubMed

11.
Castro Berman, M., Marino, D. J. G., Quiroga, M. V. and Zagarese, H.
Occurrence and levels of glyphosate and AMPA in shallow lakes from the Pampean and Patagonian regions of Argentina.
Chemosphere 200: 513-522 (2018)
Abstract - PDF - LINK - PubMed

12.
DeVette, C. I., Andreatta, M., Bardet, W., Cate, S. J., Jurtz, V. I., Jackson, K. W., Welm, A. L., Nielsen, M. and Hildebrand, W. H.
NetH2pan: A Computational Tool to Guide MHC peptide prediction on Murine Tumors.
Cancer Immunol Res : en prensa (2018)
Abstract - PDF - LINK - PubMed

13.
Epele, L. B., Manzo, L. M., Grech, M. G., Macchi, P., Claverie, A. N., Lagomarsino, L. and Miserendino, M. L.
Disentangling natural and anthropogenic influences on Patagonian pond water quality.
Science of the Total Environment 613-614: 866-876 (2018)
Abstract - PDF - LINK - PubMed

14.
Frasch, A. P., Bouvier, L. A., Oppenheimer, F. M., Juliano, M. A., Juliano, L., Carmona, A. K., Cazzulo, J. J. and Niemirowicz, G. T.
Substrate specificity profiling of M32 metallocarboxypeptidases from Trypanosoma cruzi and Trypanosoma brucei.
Molecular and Biochemical Parasitology 219: 10-16 (2018)
Abstract - PDF - LINK - PubMed

15.
Garavaglia, P. A., Rubio, M. F., Laverriere, M., Tasso, L. M., Fichera, L. E., Cannata, J. J. B. and Garcia, G. A.
Trypanosoma cruzi: death phenotypes induced by ortho-naphthoquinone substrates of the aldo-keto reductase (TcAKR). Role of this enzyme in the mechanism of action of beta-lapachone.
Parasitology : 1-9 (2018)
Abstract - PDF - LINK - PubMed

16.
Gazquez, A., Vilas, J. M., Colman Lerner, J. E., Maiale, S. J., Calzadilla, P. I., Menendez, A. B. and Rodriguez, A. A.
Rice tolerance to suboptimal low temperatures relies on the maintenance of the photosynthetic capacity.
Plant Physiology and Biochemistry 127: 537-552 (2018)
Abstract - PDF - LINK - PubMed

17.
Gimenez, C. S., Locatelli, P., Montini Ballarin, F., Orlowski, A., Dewey, R. A., Pena, M., Abraham, G. A., Aiello, E. A., Bauza, M. D. R., Cuniberti, L., Olea, F. D. and Crottogini, A.
Aligned ovine diaphragmatic myoblasts overexpressing human connexin-43 seeded on poly (L-lactic acid) scaffolds for potential use in cardiac regeneration.
Cytotechnology 70(2): 651-664 (2018)
Abstract - PDF - LINK - PubMed

18.
Gojanovich, A. D., Gimenez, M. C., Masone, D., Rodriguez, T. M., Dewey, R. A., Delgui, L. R., Bustos, D. M. and Uhart, M.
Human Adipose-Derived Mesenchymal Stem/Stromal Cells Handling Protocols. Lipid Droplets and Proteins Double-Staining.
Front Cell Dev Biol 6: 33 (2018)
Abstract - PDF - LINK - PubMed

19.
Gouw, M., Michael, S., Samano-Sanchez, H., Kumar, M., Zeke, A., Lang, B., Bely, B., Chemes, L. B., Davey, N. E., Deng, Z., Diella, F., Gurth, C. M., Huber, A. K., Kleinsorg, S., Schlegel, L. S., Palopoli, N., Roey, K. V., Altenberg, B., Remenyi, A., Dinkel, H. and Gibson, T. J.
The eukaryotic linear motif resource - 2018 update.
Nucleic Acids Research 46(D1): D428-D434 (2018)
Abstract - PDF - LINK - PubMed

20.
Guidolin, L. S., Arce-Gorvel, V., Ciocchini, A. A., Comerci, D. J. and Gorvel, J. P.
Cyclic beta-Glucans at the bacteria-host cells interphase: one sugar ring to rule them all.
Cellular Microbiology : en prensa (2018)
Abstract - PDF - LINK - PubMed

21.
Herrera, M. G., Vazquez, D. S., Sreij, R., Drechsler, M., Hertle, Y., Hellweg, T. and Dodero, V. I.
Insights into gliadin supramolecular organization at digestive pH 3.0.
Colloids and Surfaces B: Biointerfaces 165: 363-370 (2018)
Abstract - PDF - LINK - PubMed

22.
Iriarte, L. S., Midlej, V., Frontera, L. S., Moros Duarte, D., Barbeito, C. G., de Souza, W., Benchimol, M., de Miguel, N. and Coceres, V. M.
TfVPS32 Regulates Cell Division in the Parasite Tritrichomonas foetus.
Journal of Eukaryotic Microbiology 65(1): 28-37 (2018)
Abstract - PDF - LINK - PubMed

23.
Iribarren, P. A., Di Marzio, L. A., Berazategui, M. A., De Gaudenzi, J. G. and Alvarez, V. E.
SUMO polymeric chains are involved in nuclear foci formation and chromatin organization in Trypanosoma brucei procyclic forms.
PloS One 13(2): e0193528 (2018)
Abstract - PDF - LINK - PubMed

24.
Jappe, E. C., Kringelum, J., Trolle, T. and Nielsen, M.
Predicted MHC peptide binding promiscuity explains MHC class I 'hotspots' of antigen presentation defined by mass spectrometry eluted ligand data.
Immunology : en prensa (2018)
Abstract - PDF - LINK - PubMed

25.
Jensen, K. K., Andreatta, M., Marcatili, P., Buus, S., Greenbaum, J. A., Yan, Z., Sette, A., Peters, B. and Nielsen, M.
Improved methods for predicting peptide binding affinity to MHC class II molecules.
Immunology : en prensa (2018)
Abstract - PDF - LINK - PubMed

26.
Lanzarotti, E., Marcatili, P. and Nielsen, M.
Identification of the cognate peptide-MHC target of T cell receptors using molecular modeling and force field scoring.
Molecular Immunology 94: 91-97 (2018)
Abstract - PDF - LINK - PubMed

27.
Magnoni, L. J., Eding, E., Leguen, I., Prunet, P., Geurden, I., Ozorio, R. O. A. and Schrama, J.
Hypoxia, but not an electrolyte-imbalanced diet, reduces feed intake, growth and oxygen consumption in rainbow trout (Oncorhynchus mykiss).
Scientific Reports 8(1): 4965 (2018)
Abstract - PDF - LINK - PubMed

28.
Marem, A., Okamoto, D. N., Oliveira, L. C. G., Ruiz, D. M., Paggi, R. A., Kondo, M. Y., Gouvea, I. E., Juliano, M. A., de Castro, R. E., Juliano, L. and Icimoto, M. Y.
Functional roles of C-terminal extension (CTE) of salt-dependent peptidase activity of the Natrialba magadii extracellular protease (NEP).
International Journal of Biological Macromolecules 113: 1134-1141 (2018)
Abstract - PDF - LINK - PubMed

29.
Nielsen, M., Connelley, T. and Ternette, N.
Improved Prediction of Bovine Leucocyte Antigens (BoLA) Presented Ligands by Use of Mass-Spectrometry-Determined Ligand and in Vitro Binding Data.
Journal of Proteome Research 17(1): 559-567 (2018)
Abstract - PDF - LINK - PubMed

30.
Nievas, Y. R., Vashisht, A. A., Corvi, M. M., Metz, S., Johnson, P. J., Wohlschlegel, J. A. and de Miguel, N.
Protein palmitoylation plays an important role in Trichomonas vaginalis adherence.
Molecular and Cellular Proteomics : en prensa (2018)
Abstract - PDF - LINK - PubMed

31.
Palopoli, N., Gonzalez Foutel, N. S., Gibson, T. J. and Chemes, L. B.
Short linear motif core and flanking regions modulate retinoblastoma protein binding affinity and specificity.
Protein Engineering Design and Selection 31(3): 69-77 (2018)
Abstract - PDF - LINK - PubMed

32.
Pascual, M. J., Merwaiss, F., Leal, E., Quintana, M. E., Capozzo, A. V., Cavasotto, C. N., Bollini, M. and Alvarez, D. E.
Structure-based drug design for envelope protein E2 uncovers a new class of bovine viral diarrhea inhibitors that block virus entry.
Antiviral Research 149: 179-190 (2018)
Abstract - PDF - LINK - PubMed

33.
Ramos-Artuso, F., Galatro, A., Buet, A., Santa-Maria, G. E. and Simontacchi, M.
Key acclimation responses to phosphorus deficiency in maize plants are influenced by exogenous nitric oxide.
Journal of Plant Physiology 222: 51-58 (2018)
Abstract - PDF - LINK - PubMed

34.
Rasse-Suriani, F. A. O., Garcia-Einschlag, F. S., Rafti, M., Schmidt De Leon, T., David Gara, P. M., Erra-Balsells, R. and Cabrerizo, F. M.
Photophysical and Photochemical Properties of Naturally Occurring normelinonine F and Melinonine F Alkaloids and Structurally Related N(2)- and/or N(9)-methyl-beta-carboline Derivatives.
Photochemistry and Photobiology 94(1): 36-51 (2018)
Abstract - PDF - LINK - PubMed

35.
Romero, F. M., Maiale, S. J., Rossi, F. R., Marina, M., Ruiz, O. A. and Garriz, A.
Polyamine Metabolism Responses to Biotic and Abiotic Stress.
Methods in Molecular Biology 1694: 37-49 (2018)
Abstract - PDF - LINK - PubMed

36.
Rossi, F. R., Romero, F. M., Ruiz, O. A., Marina, M. and Garriz, A.
Phenotypic and Genotypic Characterization of Mutant Plants in Polyamine Metabolism Genes During Pathogenic Interactions.
Methods in Molecular Biology 1694: 405-416 (2018)
Abstract - PDF - LINK - PubMed

37.
Sanchez-Vasquez, E., Jimenez, N. A., Vazquez, N. A. and Strobl-Mazzulla, P. H.
Emerging role of dynamic RNA modifications during animal development.
Mechanisms of Development : en prensa (2018)
Abstract - PDF - LINK - PubMed

38.
Santa-Maria, G. E. and Rubio, F.
Sodium fluxes and silicon at the root plasma membrane: a paradigm shift?
Journal of Experimental Botany 69(7): 1433-1436 (2018)
Abstract - PDF - LINK - PubMed

39.
Santa-Maria, G. E., Oliferuk, S. and Moriconi, J. I.
KT-HAK-KUP transporters in major terrestrial photosynthetic organisms: A twenty years tale.
Journal of Plant Physiology 226: 77-90 (2018)
Abstract - PDF - LINK - PubMed

40.
Scaia, M.F., Morandini, L., Noguera, C.A., Ramallo, M.R., Somoza, G.M. and Pandolfi, M.
Fighting cichlids: Dynamic of intrasexual aggression in dyadic agonistic encounters.
Behavioural Processes 147: 61–69 (2018)

41.
Shao, W., Pedrioli, P. G. A., Wolski, W., Scurtescu, C., Schmid, E., Vizcaino, J. A., Courcelles, M., Schuster, H., Kowalewski, D., Marino, F., Arlehamn, C. S. L., Vaughan, K., Peters, B., Sette, A., Ottenhoff, T. H. M., Meijgaarden, K. E., Nieuwenhuizen, N., Kaufmann, S. H. E., Schlapbach, R., Castle, J. C., Nesvizhskii, A. I., Nielsen, M., Deutsch, E. W., Campbell, D. S., Moritz, R. L., Zubarev, R. A., Ytterberg, A. J., Purcell, A. W., Marcilla, M., Paradela, A., Wang, Q., Costello, C. E., Ternette, N., van Veelen, P. A., van Els, Cacm, Heck, A. J. R., de Souza, G. A., Sollid, L. M., Admon, A., Stevanovic, S., Rammensee, H. G., Thibault, P., Perreault, C., Bassani-Sternberg, M., Aebersold, R. and Caron, E.
The SysteMHC Atlas project.
Nucleic Acids Research 46(D1): D1237-D1247 (2018)
Abstract - PDF - LINK - PubMed

42.
Valguarnera, E., Spera, J.M., Czibener, C., Fulgenzi, F.R., Casabuono, A.C., Altabe, S.G., Pasquevich, K.A., Guaimas, F., Cassataro, J., Couto, A.S. and Ugalde, J.E.
RomA, a Periplasmic Protein Involved in the Synthesis of the Lipopolysaccharide Tunes Down the Inflammatory Response Triggered by Brucella.
The Journal of Infectious Diseases : en prensa (2018)
Abstract - PDF - LINK - PubMed

43.
Yanuk, J. G., Denofrio, M. P., Rasse-Suriani, F. A. O., Villarruel, F. D., Fassetta, F., Garcia Einschlag, F. S., Erra-Balsells, R., Epe, B. and Cabrerizo, F. M.
DNA damage photo-induced by chloroharmine isomers: hydrolysis versus oxidation of nucleobases.
Organic & Biomolecular Chemistry 16(12): 2170-2184 (2018)
Abstract - PDF - LINK - PubMed

44.
Zalguizuri, A., Caetano-Anollés, G. and Lepek V. C.
Phylogenetic profiling, an untapped resource for the prediction of secreted proteins and its complementation with sequence-based classifiers in bacterial type III, IV and VI secretion systems.
Briefings in Bioinformatics : bby009 (2018)
Abstract - PDF - LINK - PubMed

45.
Zschach, H., Larsen, M. V., Hasman, H., Westh, H., Nielsen, M., Miedzybrodzki, R., Jonczyk-Matysiak, E., Weber-Dabrowska, B. and Gorski,
Use of a Regression Model to Study Host-Genomic Determinants of Phage Susceptibility in MRSA.
Antibiotics (Basel) 7(1): (2018)
Abstract - PDF - LINK - PubMed

 

Covers

 

Expandir Cover

Chagas Disease Diagnostic Applications: Present Knowledge and Future Steps.

Balouz, V., Agüero, F. and Buscaglia, C.A.

Advances in Parasitology
Volume 97 , Chapter 1 pages 1-45 (2017)

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The Trypanosoma cruzi surface, a nanoscale patchwork quilt.

Mucci, J., Lantos, A.B., Buscaglia, C.A., Leguizamón, M.S. and Campetella, O.

Trends in Parasitology
Volume 33 , Issue 2 , 102 - 112 (2017)

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Albumin–Folate Conjugates for Drug-targeting in Photodynamic Therapy.

Butzbach K, Rasse-Suriani FA, Gonzalez MM, Cabrerizo FM, Epe B.

Photochem Photobiol.
Volume 92, Issue 4, pp 611-619 (2016)

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Towards high-throughput immunomics for infectious diseases: use of next-generation peptide microarrays for rapid discovery and mapping of antigenic determinants.

Carmona SJ, Nielsen M, Schäfer-Nielsen C, Altcheh J, Mucci JS, Balouz V, Tekiel V, Frasch AC, Campetella O, Buscaglia CA, Agüero F.

Mol Cell Proteomics
Volume 14, Issue 1, pp 1871-1884 (2015)

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Shallow lakes from the Central Plains of Argentina: an overview and worldwide comparative analysis of their basic limnological features.

Nadia Diovisalvi, Vanesa Y. Bohn, María Cintia Piccolo, Gerardo M. E. Perillo, Claudio Baigún, Horacio E. Zagarese

Hydrobiologia
Volume 752, Issue 1, pp 5-20

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Plant interactions with other organisms: molecules, ecology and evolution.

Amy T. Austin and Carlos L. Ballaré

New Phytologist.
Volume 204, Issue 2, pages 257–260, October 2014

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Linking phytochrome to plant immunity: low red : far-red ratios increase Arabidopsis susceptibility to Botrytis cinerea by reducing the biosynthesis of indolic glucosinolates and camalexin.

Cargnel MD, Demkura PV, Ballaré CL.

New Phytologist.
Volume 204, Issue 2, pages 42-54, October 2014.

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Identification of a type IV secretion substrate of Brucella abortus that participates in the early stages of intracellular survival.

Döhmer PH, Valguarnera E, Czibener C, Ugalde JE.

Cellular Microbiology.
Volume 6, Issue 3, pp 396-410 (2014)

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No time for candy: passionfruit (Passiflora edulis) plants down-regulate damage-induced extra floral nectar production in response to light signals of competition

Miriam M. Izaguirre, Carlos A. Mazza, María S. Astigueta, Ana M. Ciarla, Carlos L. Ballaré

Oecologia
Volume 173, Issue 1, pp 213-221 (2013)

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DNA methyltransferase3A as a molecular switch mediating the neural tube-to-neural crest fate transition.

Hu, N.; Strobl-Mazzulla, P.H.; Sauka-Spengler, T.; Bronner, M.

Genes & Development
26(21):2380-2385 (2012)

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Fast motility of the malaria transmission stage is essential for intra-dermal migration and triggered by the small heat-shock protein sHSP20.

Montagna G, Buscaglia CA, Münter S, Brinkmann V, Frischknecht F, Matuschewski K.

J Biol Chem
287, 2410-2422 (2012)

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Toxoplasma gondii: without stress there is no life.

Figueras MJ, Angel SO, Cóceres VM and Alomar ML.

Stress Response in Microbiology.
Ed. Jose M. Requena. Caister Academic Press, Chapter 13, 303-319, 2012.

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Neuronal glycoprotein M6a induces filopodia formation via association with cholesterol-rich lipid rafts.

Scorticati C, Formoso K, Frasch AC.

J Neurochem. 2011
Mar 23. doi: 10.1111/j.1471-4159.2011.07252.x. [Epub ahead of print]

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Dendritic arbors of developing retinal ganglion cells are stabilized by beta 1-integrins.

Marrs GS, Honda T, Fuller L, Thangavel R, Balsamo J, Lilien J, Dailey ME and Arregui C.

Molecular and Cellular Neuroscience 2006
Volume 32, Issue 3 , Pages 230-241

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The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease.

El-Sayed NM et al

Science 2005
Volume 309, Issue 5733, Pages 409-415

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The genome of the kinetoplastid parasite, Leishmania major.

Ivens AC et al

Science 2005
Volume 309, Issue 5733, Pages 436-442
Role of N-oligosaccharide endoplasmic reticulum processing reactions in glycoprotein folding and degradation.

Parodi, A.J.

Biochem J. 2000
Volume 348, Issue 1, Pages 1-13.
Structural basis of sialyltransferase activity in trypanosomal sialidases

Alejandro Buschiazzo, Gisele A. Tavares1, Oscar Campetella, Silvia Spinelli, Marfa L. Cremona, Gastón París, Maria Fernanda Amaya, Alberto C.C. Frasch and Pedro M. Alzari

The EMBO Journal 2000
Volume 19, Issue 1, Pages 16 - 24